Basic Information
VIS ID
TVIS44024398
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
157248632/157278842 (Hg38)
End
157248632/157278842 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02772 ; LOC105371456
Nearest miRNA
hsa-mir-101-1/Upstream/342598; hsa-mir-1182/Downstream/2621137;
Nearest TSS
ENST00000473358/Upstream/41706; ENST00000607010/Downstream/1874;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/83497, chr1-CpG: 28/Downstream/700088
Nearby gene
ETV3(-140249) ;
Upstream sequence
gcggtagcaaaagttgtcttaagtctccgagcacgtgggagttgaaagtgccatttttgggccattgagagccacggtctaatttgcattgaggccatgc
Downstream sequence
ggtattgaagtaaaaaataagcctcttagggcagatttctgaacggaggccgacagccttgagattgcgaaggagacatctaagctgggtagttttagga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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