Basic Information
VIS ID
TVIS44024399
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
157928819/157959029 (Hg38)
End
157928819/157959029 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1022785; hsa-mir-1182/Downstream/1940950;
Nearest TSS
ENST00000473358/Upstream/60773; ENST00000359209/Downstream/34244;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/763684, chr1-CpG: 28/Downstream/19901
Nearby gene
KIRREL1(+34244) ;
Upstream sequence
gattaaacaacttacccaagagcatcaagctagtttccggtaaaactgtgattcaacctgatgttttactccaaaAGAAAGCTAGATTTCTTTACAGTTT
Downstream sequence
CACTAAGTGAGGCAAAGTCCCCCAACAGTAAACTGGGATCCACCTGTGGATGTTACGATCCGACCTGAAAACATTTAGGTTTACTTGTCACCTCCGTAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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