Basic Information
VIS ID
TVIS44024400
Fusion event
HTLV-1-CD48 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160651436/160681646 (Hg38)
End
160651436/160681646 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD48
Nearest miRNA
hsa-mir-101-1/Upstream/781567; hsa-mir-1182/Downstream/545540;
Nearest TSS
ENST00000473358/Upstream/5275; ENST00000488819/Downstream/30157;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/262050, chr1-CpG: 24/Downstream/120247
Upstream sequence
GATCCAGGGAAGGGGCCTGAATGCCCCAGGAGGCAGAGTCATGAAGAAGAAGTTCTACAGAGGGAGCCAGTGAGCAGCCTTGACCTCCTGAGGCCTCACA
Downstream sequence
GACTCACTGCAAGAGCGGCTTCTAGGCAGTGAAGCTAAGCTGCGTCCTGGAGGGGGCGCCACAGTCCATCATATGCTCTGGGAACAAAATGGGGTTATGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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