VISDB Viral Integration Site DataBase

VIS ID

TVIS44024403

Fusion event

HTLV-1-EPHA2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.13

Reference genome

Start

End

16475353/16148858 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-193b-3p ; hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-940 ; hsa-mir-520d-3p ; hsa-mir-3187-3p ; hsa-mir-1227-5p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-5187-5p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-605-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-6754-5p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-211-3p ; hsa-mir-6757-5p ; hsa-mir-1182 ; hsa-mir-2392 ; hsa-mir-3133 ; hsa-mir-186-5p ; hsa-mir-124-3p ; hsa-mir-302c-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4526 ; hsa-mir-8063 ; hsa-mir-3660 ; hsa-mir-888-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-1197 ; hsa-mir-1273f ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-1286 ; hsa-mir-3622b-5p ; hsa-mir-3675-5p ; hsa-mir-4253 ; hsa-mir-4436a ; hsa-mir-4712-3p ; hsa-mir-486-3p ; hsa-mir-5000-3p ; hsa-mir-6721-5p ; hsa-mir-6762-5p ; hsa-mir-6845-5p ; hsa-mir-6862-5p ; hsa-mir-6877-5p

Nearest miRNA

hsa-mir-12136/Upstream/3569835; hsa-mir-101-1/Downstream/710091;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/29, chr1-CpG: 89/Downstream/6131

Nearest cancer related gene

EPHA2(OG, No orient, 0)

Upstream sequence

CGGGCGCAATGGTGTCAATCTTGGTGAACAGGCGCTTCTGGAAGTTGGTGCCGTAGTCCAGGTCCGACTCGGCATAGTAGAGGTTGAAAGTCTCCTTGCA

Downstream sequence

GGAGCTGGCGCCACCAGGGAAGCTGTTGCAGTCACGTACAGTAAACTTGAGCTCAATGAAGATACGCTCAGCCTCTCCTCGGTACACCCAGTTGGTGCGG