Basic Information
VIS ID
TVIS44024409
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
164986381/165017144 (Hg38)
End
164986381/165017144 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/2674504; hsa-mir-1182/Downstream/890777;
Nearest TSS
ENST00000473358/Upstream/204416; ENST00000457106/Downstream/193483;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/440464, chr1-CpG: 29/Downstream/100375
Nearby gene
PBX1(+165321) ;
Nearest cancer related gene
PBX1(OG, +165321) ;
Upstream sequence
ttgagcagtggtttgtagttctccttgaagaggtccttcacgtcccttgtgagttggattcctaggtattttattcgctttgaagcaactgtgaatggga
Downstream sequence
gttctctcatatttgactctctgtttgtctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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