Basic Information
VIS ID
TVIS44024414
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
17054331/16727836 (Hg38)
End
17054331/16727836 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/4148813; hsa-mir-101-1/Downstream/131113;
Nearest TSS
ENST00000473358/Upstream/26290; ENST00000619677/Downstream/12437;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2440, chr1-CpG: 19/Downstream/12432
Nearby gene
TRG-CCC5-1(-481) ;
Upstream sequence
AAGGAGAGAAGCTGCGGGCAGGACAGTCACGTCAGAGGTCCAAGAGGCTTCAGCGGCCCAAAGAAAGGGAAGGTGTGTGGGGAAGAATCTGCGTGGAGAT
Downstream sequence
GAGGGGAGCGGCGGGGACTGGTCCTTGCGCAGAGGTGGCCAGTGGACCCTCAGGGCTGTACCCCAGACACCGTGAACCGAATTTGCTCACATCGTCAGCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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