Basic Information
VIS ID
TVIS44024426
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
172942530/172973390 (Hg38)
End
172942530/172973390 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1G
Nearest miRNA
hsa-mir-101-1/Upstream/828746; hsa-mir-1182/Downstream/2994980;
Nearest TSS
ENST00000473358/Upstream/66490; ENST00000460950/Downstream/77573;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/439985, chr1-CpG: 100/Downstream/503449
Nearby gene
TNFSF18(-67830) ;
Upstream sequence
GCACAGATTGCAATCCGCAGACAAGGGTTTCCCTGAATCTCCTCTCCAATTCCTGCCCCATCTTATTCTTACAAAACAAACAGCTTTTTCCCTCCTGTGC
Downstream sequence
CAGCAGCTACCACAGACAGTTTCTATCCTTTTTAAATTTGTACCTGCTGAGGGAAGAGAAGGCTTCCCTTCCTACATAACTTTGGTGTGCTCAAGAGAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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