Basic Information
VIS ID
TVIS44024442
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
186983563/187014431 (Hg38)
End
186983563/187014431 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/6576041; hsa-mir-1182/Downstream/5701897;
Nearest TSS
ENST00000473358/Upstream/160145; ENST00000642737/Downstream/56269;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/333482, chr1-CpG: 56/Downstream/5794071
Nearby gene
PLA2G4A(+25450) ;
Upstream sequence
gtctggaataaaagctgtcacaagatgtgtaaaagtgtgacacagtcatggagaactgtctcctaacaTAGGAGatacacacacatatacacatacaaac
Downstream sequence
atgtacacacatacatgatatctatatggtatgcatatatggtatatgtatactggtgtatatatagcataagtaaatatatggtatatgtaaacataca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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