Basic Information
VIS ID
TVIS44024447
Fusion event
HTLV-1-LOC105376815 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
19338198/19011704 (Hg38)
End
19338198/19011704 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC105376815
Nearest miRNA
hsa-mir-12136/Upstream/114556; hsa-mir-101-1/Downstream/1621975;
Nearest TSS
ENST00000473358/Upstream/55018; ENST00000437898/Downstream/66123;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/54315, chr1-CpG: 83/Downstream/197953
Nearby gene
IFFO2(-55372) ;
Upstream sequence
CCAGAAAATGGAAATTATggtaaggaaacacacatacacacacatatgcacatgtacacacatatgcacatatgcacatacatacacacacacacataca
Downstream sequence
catatacaagcaTGTATATGCGACGTGTATACATACATTAGCACAGACACACACACATGCTTTcctgattcttgccctcagacgtttcatattctggtgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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