Basic Information
VIS ID
TVIS44024453
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
199138886/199169758 (Hg38)
End
199138886/199169758 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02789 ; LOC107985243
Nearest miRNA
hsa-mir-101-1/Upstream/310605; hsa-mir-1182/Downstream/2549750;
Nearest TSS
ENST00000473358/Upstream/21160; ENST00000447034/Downstream/857844;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1010524, chr1-CpG: 36/Downstream/865588
Nearby gene
LINC01221(No orient, 93022)
Upstream sequence
GGAAGATTAGTGGAGGAAAATATAAAGTTGAATCTTTTCATGTACCACAAGTTCTACTTGATTTGACCTGCCAGGTTACACCTTAATTCCAGGTGGTATT
Downstream sequence
TAGATTGAACATAGACTTACATAAAATCAAGGCTTCTGGCTTGAAGCTATCCTCTACCTCTTGCTAGTCTCCACTGAGGTGTCTAAACACACTGACTCTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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