Basic Information
VIS ID
TVIS44024456
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
20308381/19981888 (Hg38)
End
20308381/19981888 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1084740; hsa-mir-101-1/Downstream/651791;
Nearest TSS
ENST00000473358/Upstream/1472; ENST00000498348/Downstream/46291;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/98919, chr1-CpG: 36/Downstream/203979
Nearby gene
PLA2G2A(-1449) ;
Nearest cancer related gene
PLA2G2A(TSG, -1449) ;
Upstream sequence
aagcccttggactcagtaagccaaacagaaacctctactttcacagggcttccgcttaagcagaaagagacagacaatcagcaaaagacatactagtaaa
Downstream sequence
tgacatcatgtgataggtggtgacactgcaatggggagagaggcagtaggtgacagggcaggagcaccgtcatctcggacaaacaccaccactttaagtt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate