Basic Information
VIS ID
TVIS44024484
Fusion event
HTLV-1-LOC105372926 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
219978654/219805312 (Hg38)
End
219978654/219805312 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372926
Nearest miRNA
hsa-mir-101-1/Upstream/7727627; hsa-mir-1182/Downstream/312541;
Nearest TSS
ENST00000473358/Upstream/192167; ENST00000490891/Downstream/113718;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/192092, chr1-CpG: 116/Downstream/122478
Nearby gene
RNU5F-1(-67965) ;
Upstream sequence
AAAGATGGGTGGGGCTACAGGTTCGGAATCAGAGACAATCCCCCAAGCCACACATTTGCTCACTTCACCAGAGAAAGACATCTCAGTGTCCATTATAAGT
Downstream sequence
AACTGACTTACCTCTCCCCTCAGTGCCCCTGCCCCCCAGGAGCAATCAAAATCACGTGTCAAGAAATTAGACTCCTCCACGAGCCACTTCTGCCACCTAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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