Basic Information
VIS ID
TVIS44024485
Fusion event
HTLV-1-RNU5F-1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
220237601/220064259 (Hg38)
End
220237601/220064259 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
RNU5F-1
Nearest miRNA
hsa-mir-101-1/Upstream/7986574; hsa-mir-1182/Downstream/53594;
Nearest TSS
ENST00000473358/Upstream/17601; ENST00000490891/Downstream/9808;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17540, chr1-CpG: 63/Downstream/29713
Upstream sequence
aacctgactaaaggttctaagaagttcacaaccaaagattggctcatctgtcttcaaagatgatattcttaaacactaaattagactgCCTATGTTTACC
Downstream sequence
TGTCaaatgttttcacacacatcatcttatttgtcctagagcagtaccctgGGTGTTGTTATTGTGAAATATACTTAGgtcgcaggttgggttccctggg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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