Basic Information
VIS ID
TVIS44024493
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
224049551/223861849 (Hg38)
End
224049551/223861849 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3661230; hsa-mir-1182/Downstream/395191;
Nearest TSS
ENST00000473358/Upstream/15877; ENST00000618397/Downstream/132413;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15288, chr1-CpG: 63/Downstream/130711
Nearby gene
TP53BP2(-15877) ;
Nearest cancer related gene
TP53BP2(TSG, -15877) ;
Upstream sequence
gtgctgggattacaggcatgagccaccacacctgacTTCAGTCTCATTTTTATATACATTTAAAAAGTCATATGAATAAGATCAAACCTTGCTTGTATTG
Downstream sequence
TACAAAGCAGAATTGCCATCTGTTTACCTCTTACGGTGTTATATTTTTTAAGTGTGTAAGGGttttcccaagctttattgaggaatagctgacaaataca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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