Basic Information
VIS ID
TVIS44024495
Fusion event
HTLV-1-LOC110121307 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
225955876/225768174 (Hg38)
End
225955876/225768174 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC110121307
Nearest miRNA
hsa-mir-101-1/Upstream/1369863; hsa-mir-1182/Downstream/153906;
Nearest TSS
ENST00000473358/Upstream/67570; ENST00000619790/Downstream/9639;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/90548, chr1-CpG: 35/Downstream/9454
Nearby gene
SRP9(+9639) ;
Upstream sequence
GCCACTGCTGATCCCTACTTCCTTGCACTCCAAAGTAGCTTGCCTACTTCTGCCCACAGGTGAGCCTGAGACCTGATTAGCCTCTTCCTGCACGGAACAA
Downstream sequence
GAGGTAGCTTCCTCCTGAAAGATGTCCTGAGTCGCAGAAGCATTCTCTGACTTGCACAAGAATGAGTCTCCAAAACCCCAGTCACCTGGGGGGCCTGGAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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