Basic Information
VIS ID
TVIS44024497
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
226631422/226443721 (Hg38)
End
226631422/226443721 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/521579; hsa-mir-1182/Downstream/1497869;
Nearest TSS
ENST00000473358/Upstream/35642; ENST00000467495/Downstream/105079;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/35483, chr1-CpG: 120/Downstream/104958
Nearby gene
PARP1(-35621) ;
Nearest cancer related gene
PARP1(TSG, -35621) ;
Upstream sequence
TGCCAGGAAGTCATAGGCTGGGAGCTGGCATCAGACTTGCTCTGGAATCTATTTTTATTACCTATGTATCACTATGTGAGTCAATGACTTTGCCTGCTGA
Downstream sequence
GCATCAATCACAAAGAAACCGCTTTTCCCAGTCAGAGTTCTGGGTGGCGATCTGGGGGACAAAGGCAAGGAGAGGAAAACTTGGGAGGTTTTCTAGGTGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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