Basic Information
VIS ID
TVIS44024513
Fusion event
HTLV-1-TSNAX-DISC1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
232019580/231883834 (Hg38)
End
232019580/231883834 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1H
Target gene
TSNAX-DISC1
Nearest miRNA
hsa-mir-101-1/Upstream/863910; hsa-mir-1537/Downstream/1740318;
Nearest TSS
ENST00000473358/Upstream/64929; ENST00000428673/Downstream/276257;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/256465, chr1-CpG: 173/Downstream/745508
Upstream sequence
TCACTTGCTGGCTTCTCTAACTACATGGGGATGGTGCAATTGACTGAGGGTAGGATAGAGGAAAAGGATCAGGTGCAGGAGAAACATGATGCGTTCAGGG
Downstream sequence
TTAGCCACCTTGCTTGTGAATTCTAGAATTCTGCCAGCCTCACCTGAGAGCCCCTCAGAAGTAAGAGGGGCTTCTTACTGTGGAGGAAGTGTCAGAATGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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