Basic Information
VIS ID
TVIS44024520
Fusion event
HTLV-1-LOC128136 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
240136241/239972941 (Hg38)
End
240136241/239972941 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC128136
Nearest miRNA
hsa-mir-101-1/Upstream/2501750; hsa-mir-3123/Downstream/1159331;
Nearest TSS
ENST00000473358/Upstream/55986; ENST00000447095/Downstream/41407;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/584902, chr1-CpG: 105/Downstream/24596
Nearby gene
RPS7P5(+34583) ;
Upstream sequence
GCCAGGCCAAGATGGGCTCCTGCACACATGGAGAAGAGATCAACTCTCTTTGCATGCCTGTGGTTCAGAATCTTATGGAGAGAAAAAATCTTTCCTACGA
Downstream sequence
TTGCACTGGCCGACTGGAAGTTGGAACAGAGACAATCAAGGACAAATCAAAGTCAGTGAAGACTAATTTGATGCAGCTGTTTGAGGAGTCTGGGGATATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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