Basic Information
VIS ID
TVIS44024527
Fusion event
HTLV-1-SMYD3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
End
245974238/245810936 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/2464681; hsa-mir-3124/Downstream/1391031;
Upstream sequence
CTGCCAAAGCCACGTGGCCGAGCAGACGGAGGGAGTGCAGTCTCCACACTGAGGCTGACTGAAAACATAAATAACTAGGCAAGATTTTTCAGTAGCTAGT
Downstream sequence
GAGGTTATCACATACTCTGGACAAAATCCCTAGTGCTCATTACACTTCTGATATGATTTTCTCACCTCTCTCCAGGCTCACTGATGCATCTTCCAATTCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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