Basic Information
VIS ID
TVIS44024536
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
28684986/28358475 (Hg38)
End
28684986/28358475 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/1803882; hsa-mir-101-1/Downstream/2380681;
Nearest TSS
ENST00000473358/Upstream/28192; ENST00000633371/Downstream/11107;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/29319, chr1-CpG: 61/Downstream/11055
Nearby gene
PHACTR4(+11107) ;
Nearest cancer related gene
PHACTR4(TSG, +11107) ;
Upstream sequence
gacggagtttagctctttttgcccagcctgaagtgcagtggtgcgatctcaggtcaccgcaacctccgcctcccgggttcaagcgattctcctgcctcag
Downstream sequence
cctccggagtagctgggattacaggcatgctccaccacgcccagctaattttgtatttttagtagagacgggatttctgcgtgttggtcaggctggtctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate