Basic Information
VIS ID
TVIS44024543
Fusion event
HTLV-1-TMEM39B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32539630/32074029 (Hg38)
End
32539630/32074029 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM39B
Nearest miRNA
hsa-mir-12136/Upstream/315294; hsa-mir-101-1/Downstream/12920;
Nearest TSS
ENST00000473358/Upstream/555; ENST00000498613/Downstream/2102;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/578, chr1-CpG: 19/Downstream/34431
Upstream sequence
atagagaccgggtttcgccatgttgcccaggctggtctccaactcctggtctcaagcgatcctcccgcctcggcctcacaaattgctgagattacagtcg
Downstream sequence
tgagccaccacacccagtcAGGTTGTGACTTTTTTAGGTGCTTAGGAGCTTTGTGCAGAACTTTTGTGCGAAGTGGTGCGTGGGAGCTTGGGCTAGACTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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