VISDB Viral Integration Site DataBase

VIS ID

TVIS44024551

Fusion event

HTLV-1-STK40 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

36838884/36373283 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-31-5p ; hsa-mir-7-5p ; hsa-mir-196a-5p ; hsa-mir-103a-3p ; hsa-let-7d-5p ; hsa-mir-940 ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-183-5p ; hsa-mir-593-3p ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-4313 ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6728-3p ; hsa-mir-4747-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-718 ; hsa-mir-572 ; hsa-mir-4722-5p ; hsa-mir-20a-3p ; hsa-mir-6886-5p ; hsa-mir-4768-3p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-1178-3p ; hsa-mir-6749-3p ; hsa-mir-642a-5p ; hsa-mir-7106-3p ; hsa-mir-3934-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4690-5p ; hsa-mir-6885-3p ; hsa-mir-3977 ; hsa-mir-7111-3p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-4750-3p ; hsa-mir-6845-3p ; hsa-mir-3121-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-5196-3p

Nearest miRNA

hsa-mir-12136/Upstream/1703589; hsa-mir-101-1/Downstream/788280;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/31300, chr1-CpG: 76/Downstream/12205

Upstream sequence

caggACAGCTGAATGATGCTGTGGCTGGCGGTGTCACCAGGTCTTTGCTGGGTGAAGGGTGGGTGCTCCCTGCTCCGTGCTGAGGCCGCTTCCCTGTGGC

Downstream sequence

AAGTCTCTGCAGGTATGTCTTTTTTTCATtatcatttgatgggcacccaccgcttgccagaaaccattcccagtgtttcccagattctctctttaactcg