Basic Information
VIS ID
TVIS44024552
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37045899/36580298 (Hg38)
End
37045899/36580298 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/1910604; hsa-mir-101-1/Downstream/581265;
Nearest TSS
ENST00000473358/Upstream/97020; ENST00000641463/Downstream/123655;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/115768, chr1-CpG: 233/Downstream/452478
Nearby gene
CSF3R(-96984) ;
Nearest cancer related gene
CSF3R(OG, -96984) ;
Upstream sequence
CAGTATTTTGGATTATCCTGCTACCCAAACTTAACGGTATTAGTTTAACCAGAAGGCTTTTTCTGTCAGTACACATTAGTacacacacacacacacacac
Downstream sequence
acacacacacacacacagagtcacacaccctcataagcatatccatgtacacacattcacacatatgtacccctgcacatttacaaccctgcacacacat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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