Basic Information
VIS ID
TVIS44024555
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37513264/37047663 (Hg38)
End
37513264/37047663 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/2377969; hsa-mir-101-1/Downstream/113900;
Nearest TSS
ENST00000473358/Upstream/13534; ENST00000642067/Downstream/85826;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/12640, chr1-CpG: 44/Downstream/270347
Nearby gene
GRIK3(-13420) ;
Upstream sequence
CAGGCATCTGAGGGTGGGGAGGGTTCCTCCAGGACCCAGTTGATGGGGACCCGGCGGGGCCCCCCATCTCTCACACATGCCGGCTTCCCATGCCAAGTCG
Downstream sequence
CTTCCTCTTCTCCCCACTGCCTGTGGGGAGACGAGCTCCAAACCCAGCCCATCTGCTGCATTTTCCTGAGACTCCCGAGACGATCCAATTCCGCACACCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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