Basic Information
VIS ID
TVIS44024567
Fusion event
HTLV-1-PPCS integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
42923165/42457494 (Hg38)
End
42923165/42457494 (Hg38)
Orient
-
Location type
UTR5
Target gene
PPCS
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-32-5p ; hsa-mir-186-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-12136/Upstream/1700122; hsa-mir-101-1/Downstream/714158;
Nearest TSS
ENST00000473358/Upstream/200; ENST00000469615/Downstream/1710;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/590, chr1-CpG: 56/Downstream/5632
Upstream sequence
TCTTGGGTTAATTTCCTCTTGATCTGGAGATGGCCTTTCTGCATCTGtattcgctaggcacaggggatacagagatgaataagacaccgccctccctcat
Downstream sequence
ggacctcacaatctagtgagggagctggacacagacataattacaatacagagtgataaatgctctagtggaggtatgtacaaagtgcagtcagatcatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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