Basic Information
VIS ID
TVIS44024571
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
4682862/4622802 (Hg38)
End
4682862/4622802 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1062012; hsa-mir-101-1/Downstream/1239870;
Nearest TSS
ENST00000473358/Upstream/51254; ENST00000466761/Downstream/31930;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/461190, chr1-CpG: 317/Downstream/31127
Nearby gene
AJAP1(+32243) ;
Nearest cancer related gene
AJAP1(TSG, +32243) ;
Upstream sequence
actcacatgtctcattcactagtggacaagatcattgccgaaaccaggggtcaaggtagagtctaccagaccatgtcctgcttattttaatatgaatgtt
Downstream sequence
cacagtaaacttgtttagaaaatgaaaaatctgacacacatgccaaactgaccaggtgccggggcaacaggTCACCAGATGATGGTCACCCTACAGGGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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