Basic Information
VIS ID
TVIS44024575
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
47191300/46725628 (Hg38)
End
47191300/46725628 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/2180076; hsa-mir-101-1/Downstream/4334209;
Nearest TSS
ENST00000473358/Upstream/6564; ENST00000413093/Downstream/32210;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6217, chr1-CpG: 40/Downstream/297926
Nearby gene
EFCAB14(No orient, 6564)
Upstream sequence
GAGGTCCATTTCTGCtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgAGAGAGAGAGGAACAAAGTGTGATCAACAATATGATACAAGATGC
Downstream sequence
AGAAAAGATAGGAATAGCGTGAAGGAAAGTTTTCAAAAGGTAATGATCCtttattcattcattcattcattcatCTGTCAAATATGtattgtattccaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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