Basic Information
VIS ID
TVIS44024577
Fusion event
HTLV-1-AGBL4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49045245/48579573 (Hg38)
End
49045245/48579573 (Hg38)
Orient
+
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4034021; hsa-mir-101-1/Downstream/2480264;
Nearest TSS
ENST00000473358/Upstream/107365; ENST00000456002/Downstream/83671;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/107174, chr1-CpG: 69/Downstream/196946
Upstream sequence
caagtgatccacccgcctcagcctcccaaattgctgggattacaggcatgagccactgcgcccagccccatattgttttcgaatcaagaactgggcatct
Downstream sequence
tacttgactctttcctctaccccgtatccaaataatcagcaaGAATACTCAATCCggccaggcatggtggctcacgcctgtaatcccagcactttgggag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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