Basic Information
VIS ID
TVIS44024581
Fusion event
HTLV-1-LOC101929721 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49723939/49258267 (Hg38)
End
49723939/49258267 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101929721
Nearest miRNA
hsa-mir-12136/Upstream/4712715; hsa-mir-101-1/Downstream/1801570;
Nearest TSS
ENST00000473358/Upstream/856; ENST00000494555/Downstream/593251;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/359026, chr1-CpG: 34/Downstream/765478
Upstream sequence
ccaaagaccaaaagtacataaaaccacaaagatgaggaaaaaacagagcagaaaaaatggaaactctaaaaagcagagcgcctctcctcctccaaaggaa
Downstream sequence
cgcagttcctcaccagcaacggaacaaagctggatggagaatgactttgatgagttgagagaagaaggcttcagacgatcaaactactccgagctacaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate