Basic Information
VIS ID
TVIS44024590
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.31
Reference genome
GRCh37/hg19
Start
5665938/5605878 (Hg38)
End
5665938/5605878 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/2045088; hsa-mir-101-1/Downstream/256794;
Nearest TSS
ENST00000473358/Upstream/112821; ENST00000493807/Downstream/62377;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/833385, chr1-CpG: 43/Downstream/106118
Nearby gene
MIR4417(+41735) ;
Upstream sequence
ccagccTACTTTCTGTTTGTGAACAGATATCCCTCTCATGCtttttaattgaggaaaactttgaattcagtagtttgcacagatcttaagtgtaaaattc
Downstream sequence
aataacttctgacaaatatacgtacagagttgactcttgaattatgtaggggttaaaggcacacagcccctgcacagtcaaaaatctgcacataaatttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate