Basic Information
VIS ID
TVIS44024600
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
61294994/60829322 (Hg38)
End
61294994/60829322 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/1096026; hsa-mir-101-1/Downstream/1016753;
Nearest TSS
ENST00000473358/Upstream/3738; ENST00000496712/Downstream/35937;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/755454, chr1-CpG: 86/Downstream/213648
Nearby gene
LOC101926964(No orient, 3738)
Upstream sequence
aatgatagatgttttccctgggaaactagaagacatcacaggaaaggtgaacttcaggatagatcttgaagcacaagcagaaatttgctagagcataaga
Downstream sequence
gggaagagcagtggaggcaTGACCTATTGTAAACCAATCCCGTAAGATACAAATATGTTTTGACAATATCAGTTAATgactttacatattttcctccaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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