Basic Information
VIS ID
TVIS44024608
Fusion event
HTLV-1-LINC01702 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
67991779/67526096 (Hg38)
End
67991779/67526096 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
LINC01702
Nearest miRNA
hsa-mir-101-1/Upstream/897579; hsa-mir-11399/Downstream/657422;
Nearest TSS
ENST00000473358/Upstream/3742; ENST00000484245/Downstream/158965;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/94953, chr1-CpG: 138/Downstream/159134
Nearby gene
SERBP1(-95656) ;
Upstream sequence
TACATTGTATCAGCATAGTCTTCACAATTTTGAGGTCAAAATGTTTTAAAATATTAGAAggccgggagtggtggctcatgcctgtaatcccagcactttg
Downstream sequence
ggaggcagaggcaggaggatcacttgagcttaggagtttgagaccagcctggccaacatggtgaaatctcatctttacaaaaaatacaaaaattagccgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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