Basic Information
VIS ID
TVIS44024620
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
79188030/78722345 (Hg38)
End
79188030/78722345 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/1662143; hsa-mir-11399/Downstream/6411449;
Nearest TSS
ENST00000473358/Upstream/59610; ENST00000415629/Downstream/195540;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/230514, chr1-CpG: 33/Downstream/284251
Nearby gene
IFI44(+58267) ;
Upstream sequence
CATGCGTATGTGATGTGGGTGTGTATGCTAATAGAATTTATTCAAATAATGGGATGGAAGTAAAAGTATGAGGCCTGGGATTTGATGATGTACAGTATTA
Downstream sequence
AACAGGACTTAGAGAAGAACCCAGTGGGAAGAGCTATGGGGAACAGACTAAATTCCTCATAGAAACCTCTCTCATGTTCCCTGACATTCtgtctgtccct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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