Basic Information
VIS ID
TVIS44024626
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
83149414/82683731 (Hg38)
End
83149414/82683731 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/5623529; hsa-mir-11399/Downstream/2450063;
Nearest TSS
ENST00000473358/Upstream/422598; ENST00000419658/Downstream/219452;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/880368, chr1-CpG: 50/Downstream/1176853
Nearby gene
LINC01361(No orient, 290152)
Upstream sequence
AAGCCCTGCTTTTATTATACAAAATTTGTCTTCATTTTCAGAACTATCTATTTATTTTTGAAATGAGCTTCAAGAGCCTAATTTTAGGTTAAAAAGCTAA
Downstream sequence
ATATTGATTTTTTTTTCTCTTTACAACCTACTTATCATCACTTGTAGGTGTCTGCTCATTAGGAAGACTGTCATCACAAAGAAATTCTCAGGAAGAAAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate