Basic Information
VIS ID
TVIS44024627
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
84187347/83721664 (Hg38)
End
84187347/83721664 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/6661462; hsa-mir-11399/Downstream/1412130;
Nearest TSS
ENST00000473358/Upstream/275697; ENST00000439186/Downstream/68616;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1918301, chr1-CpG: 50/Downstream/138920
Upstream sequence
CATCTGACTTTTGTCTCATGCTATCACTAAAGCTTAACTATTTCTCTTCAATGACTATTCTCTGTGTGTGTGTTATGTAAGGGGGTCCCTAGTGCCACAT
Downstream sequence
AGTACAGATATAAACAGGGTTTATTTGGAAAGACTTAGAAGCAGATAAGTAGCAGGGTGTATGCTGCCCCCTGCATCTCATTATTCCATAACATGGGCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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