Basic Information
VIS ID
TVIS44024638
Fusion event
HTLV-1-LINC01965 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
104547306/103930848 (Hg38)
End
104547306/103930848 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01965
Nearest miRNA
hsa-mir-1285-2/Upstream/1498482; hsa-mir-10b/Downstream/5210642;
Nearest TSS
ENST00000437798/Upstream/50639; ENST00000609391/Downstream/121034;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1193893, chr2-CpG: 44/Downstream/728282
Nearby gene
LOC100287010(-448002) ;
Upstream sequence
tttattttattttTAAagagggagtttcactgtgtctcccaggctggagtgcagtggcgcaatctcaactcactgtaacctctgcctctcgggttcaagt
Downstream sequence
ggttctcctgcctcagcctcccgagtagcttggattacaggcatgcaccaccacgtccagctaatctttgaattttagtagagatggggttttgctgtgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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