Basic Information
VIS ID
TVIS44024643
Fusion event
HTLV-1-MIR548AU integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
107904179/107287723 (Hg38)
End
107904179/107287723 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
MIR548AU
Nearest miRNA
hsa-mir-1285-2/Upstream/4855357; hsa-mir-10b/Downstream/1853767;
Nearest TSS
ENST00000437798/Upstream/400615; ENST00000443833/Downstream/74559;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/399963, chr2-CpG: 16/Downstream/256522
Upstream sequence
CATGAGATACTGTTCCCCAAAGCCTGAGCCTCTTTTGGAAGGTTGAGGGTTGGCTGTGGCTTCAAAGTCTAATGCTAAGCCGAAGGACTCGGTCATTCTA
Downstream sequence
CTCCATCAGCTTCAGTGTATGTTGAGAATCCATGTTTTATTGCCTTAAATTGTTTAGAAACACATGAGAAGAGTTTCGTGACTATTAGATAAGAAGAGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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