Basic Information
VIS ID
TVIS44024652
Fusion event
HTLV-1-PAX8-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
114017158/113259581 (Hg38)
End
114017158/113259581 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
PAX8-AS1
Nearest miRNA
hsa-mir-1285-2/Upstream/1488447; hsa-mir-10b/Downstream/323378;
Nearest TSS
ENST00000437798/Upstream/17802; ENST00000453673/Downstream/19317;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/23083, chr2-CpG: 29/Downstream/16201
Upstream sequence
CATCTGACCATGCAGGCGTGCTTTGCAGTGGGTAGAGCAGTGCTTTCCTCCTCCCAgctgcacactggaatcacctggagagtccagaaacttcccgcct
Downstream sequence
caggtcagttcagtcagaatcttttggcatagcatccctgaatctgtatttttaaaaatctcctctgttgatAGCCTAGAGTTTATATCTACTCTGTGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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