Basic Information
VIS ID
TVIS44024706
Fusion event
HTLV-1-GALNT3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
166616278/165759768 (Hg38)
End
166616278/165759768 (Hg38)
Orient
-
Location type
Intronic
Target gene
GALNT3
miRNAs that regulate target gene
hsa-mir-340-5p ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-mir-3977 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-223-5p ; hsa-mir-496 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6513-3p ; hsa-mir-6504-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-8087 ; hsa-mir-7-5p ; hsa-mir-302c-3p ; hsa-mir-520e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302e ; hsa-mir-302b-3p ; hsa-mir-302d-3p ; hsa-mir-520f-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-3686 ; hsa-mir-4325 ; hsa-mir-4473 ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-512-3p ; hsa-mir-1244 ; hsa-mir-5692a
Nearest miRNA
hsa-mir-128-1/Upstream/5351886; hsa-mir-10b/Downstream/2823175;
Nearest TSS
ENST00000437798/Upstream/185659; ENST00000425688/Downstream/2139;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/917385, chr2-CpG: 94/Downstream/33631
Upstream sequence
TCAATTTGTGTTTTGAACATGTATATAATGGAGATTTCTTTCTTCCTcagatttattgagatataacaaataaaaattctatacatttgcagtgtatatc
Downstream sequence
atagtgtttatatatgtatacattgtaaaatgattattgcaatcaagctaattaacatatccatcaccttatcggcttatggagcgggtggtaagaacat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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