Basic Information
VIS ID
TVIS44024738
Fusion event
HTLV-1-C2CD6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
202444722/201579999 (Hg38)
End
202444722/201579999 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2I
Target gene
C2CD6
Nearest miRNA
hsa-mir-10b/Upstream/12446888; hsa-mir-1244-1/Downstream/5203235;
Nearest TSS
ENST00000437798/Upstream/68172; ENST00000493754/Downstream/39155;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/127714, chr2-CpG: 29/Downstream/38862
Upstream sequence
ggagtgcagtagcacgatcatagctcactgcagtctcgaactcctgggctcaatcgacccttctgcctcaacctcccaagtcacttggactacaggcaca
Downstream sequence
tgccaccacacctggctaattctatgtgtgtagagacagggtcttgctatgttgccagactggtctccaactactggcctcaacaactctcccaccttag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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