VISDB Viral Integration Site DataBase

VIS ID

TVIS44024740

Fusion event

HTLV-1-SUMO1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

203087580/202222857 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-4276 ; hsa-mir-4474-5p ; hsa-mir-491-5p ; hsa-mir-4450 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-205-3p ; hsa-mir-6514-5p ; hsa-mir-1296-3p ; hsa-mir-6782-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6887-5p ; hsa-mir-5010-5p ; hsa-mir-6795-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6739-5p ; hsa-mir-6878-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6804-5p ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-5681a ; hsa-mir-3154 ; hsa-mir-8085 ; hsa-mir-6797-5p ; hsa-mir-6731-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6873-5p ; hsa-mir-5093 ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-202-3p ; hsa-mir-203a-3p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-654-3p ; hsa-mir-8076 ; hsa-mir-3688-3p ; hsa-mir-5700 ; hsa-let-7e-5p ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-let-7a-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7g-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7f-5p ; hsa-let-7b-5p ; hsa-mir-5585-3p ; hsa-mir-8068 ; hsa-mir-4424 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-3074-3p ; hsa-mir-624-5p ; hsa-mir-7150 ; hsa-mir-106a-3p ; hsa-mir-24-3p ; hsa-mir-4736 ; hsa-mir-4284 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6868-5p ; hsa-mir-211-3p ; hsa-mir-7845-5p ; hsa-mir-552-3p ; hsa-mir-6757-3p ; hsa-mir-603 ; hsa-mir-7977 ; hsa-mir-9-5p ; hsa-mir-383-3p ; hsa-mir-431-3p

Nearest miRNA

hsa-mir-10b/Upstream/13089746; hsa-mir-1244-1/Downstream/4560377;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/51284, chr2-CpG: 60/Downstream/15035

Upstream sequence

tcagcctcccaaagtgctgggattacaggcttgagccactacgcccggccTGCttttttttttttctcttttctatgacagagtctcgctctgtcactca

Downstream sequence

ggctggagtgcagtggcacaatctcggctcactgcaacctcaggttcaagcgattttctcatccctcaaccacctgaatagctgggattacaggcatgca