VISDB Viral Integration Site DataBase

VIS ID

TVIS44024755

Fusion event

HTLV-1-MOGAT1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

q36.1

Reference genome

Start

End

223555702/222690983 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5089-5p ; hsa-mir-4666a-5p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1273g-3p ; hsa-mir-511-3p ; hsa-mir-5698 ; hsa-mir-5004-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-6499-3p ; hsa-mir-432-5p ; hsa-mir-4701-5p ; hsa-mir-4715-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4775 ; hsa-mir-1227-3p ; hsa-mir-6128 ; hsa-mir-4735-5p ; hsa-mir-500b-3p ; hsa-mir-6504-3p ; hsa-mir-455-5p ; hsa-mir-4438 ; hsa-mir-590-3p ; hsa-mir-3686 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-4660 ; hsa-mir-4708-3p ; hsa-mir-3607-3p ; hsa-mir-3714 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-6131 ; hsa-mir-4795-5p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3140-5p ; hsa-mir-8079 ; hsa-mir-1245a

Nearest miRNA

hsa-mir-10b/Upstream/2784418; hsa-mir-1244-1/Downstream/2319478;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/19042, chr2-CpG: 110/Downstream/169857

Upstream sequence

TTTTATAAAAGGAAGACAATTACAGAGAAAAATGTTTAAATTTCACAAAAGCACAGAAACATATTTAAAGTGTAATGTTTGCTTATTCAAAGCATTGCCG

Downstream sequence

CAGTGAGTTTGAGTCGTATAGTTAAGAGCAGGTTTGGCAAATTCATGGACAAGAGATGTAGGTACCCCCTTCTCCATAGCCTTATCAGACACATATACTC