Basic Information
VIS ID
TVIS44024762
Fusion event
HTLV-1-LOC105374323 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
23595478/23372607 (Hg38)
End
23595478/23372607 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374323
Nearest miRNA
hsa-mir-3125/Upstream/4024102; hsa-mir-10b/Downstream/1956033;
Nearest TSS
ENST00000437798/Upstream/12231; ENST00000489446/Downstream/8648;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2328518, chr2-CpG: 256/Downstream/12251
Nearby gene
KLHL29(+12820) ;
Upstream sequence
AAACAAACTTTAGCAGCTGTGTAACCTTTAGTCTACAAAGATTGTCAGATCCAAATCCAGAAAATAACACTGCTTCAAACTCCTGTAGCTGAGAAGGCCC
Downstream sequence
AAGGTGACAAAATCCAGGAGGGGAGAAAGCTGTTAGCTGAGGATGCTAAGGAGAGAACAGGGGGAGGCCAGCTACATTTCATATTAGCCAGAAATGTCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate