Basic Information
VIS ID
TVIS44024779
Fusion event
HTLV-1-FARP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242416242/241476827 (Hg38)
End
242416242/241476827 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
FARP2
Nearest miRNA
hsa-mir-10b/Upstream/1020738; hsa-mir-3133/Downstream/1078;
Nearest TSS
ENST00000437798/Upstream/5515; ENST00000486736/Downstream/7263;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/120041, chr2-CpG: 182/Downstream/30775
Upstream sequence
tatacatacatacacacatacatacatacaAaaaatatataattgagtgggttttagtatcttcacaaggttatgtagccatcaatgtcgaattcagaac
Downstream sequence
attttcatcaccccaaagtgaaacccccacagcaattaacagtcacttcccatcactattttgaagggaaccctgttctcaggagactctgttctgaggt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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