VISDB Viral Integration Site DataBase

VIS ID

TVIS44024798

Fusion event

HTLV-1-GEMIN6 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

p22.1

Reference genome

Start

End

39005553/38778411 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-3161 ; hsa-mir-599 ; hsa-mir-526b-5p ; hsa-mir-630 ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-4536-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4257 ; hsa-mir-493-5p ; hsa-mir-6516-3p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-411-5p ; hsa-mir-500b-3p ; hsa-mir-3120-5p ; hsa-mir-3613-3p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-495-3p ; hsa-mir-548ac ; hsa-mir-548as-3p ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-564 ; hsa-mir-5688 ; hsa-mir-616-5p ; hsa-mir-6510-3p ; hsa-mir-6888-3p ; hsa-mir-1247-3p ; hsa-mir-1304-3p ; hsa-mir-2276-3p ; hsa-mir-3194-3p ; hsa-mir-4532 ; hsa-mir-5001-3p ; hsa-mir-6778-3p ; hsa-mir-6796-3p ; hsa-mir-6836-3p ; hsa-mir-6890-3p

Nearest miRNA

hsa-mir-1301/Upstream/3306925; hsa-mir-10b/Downstream/8599264;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/26869, chr2-CpG: 42/Downstream/97109

Upstream sequence

TAAGTACCATTTGGTTTTTAGTACAGTGTTAGGTATCGTGTGGCTGCAGGACAGGACCAGAAATCTAAGCTCTAGAGCTGTAGCCGCTGGCCCTTCGTTT

Downstream sequence

GTGCATCCTTCAAACAAATTTTAAGGGGCAGTTGTCATAAATCGGGGGAGCCTCTCGATGGCGGGATCCAGCGGAGACACAGAGCCAGAGAGCGCGTGGG