Basic Information
VIS ID
TVIS44024819
Fusion event
HTLV-1-GTF2A1L integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
48862822/48635683 (Hg38)
End
48862822/48635683 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
GTF2A1L
Nearest miRNA
hsa-mir-1301/Upstream/1257913; hsa-mir-10b/Downstream/423920;
Nearest TSS
ENST00000437798/Upstream/17827; ENST00000508440/Downstream/34114;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/17837, chr2-CpG: 28/Downstream/119799
Upstream sequence
gcagctctcctcccactccaggcttgcaatagggaagagtataattccaatacctacttctgaggtgctttccacctcagaagtggtggaggctgtggag
Downstream sequence
gctactaccctgctccagagcaggtgcttcagtctgtggcgcaagagtaaaatgcttgtatggccatgcagctgggttacctagaatggctgactttgta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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