Basic Information
VIS ID
TVIS44024822
Fusion event
HTLV-1-LOC730100 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
51550682/51323544 (Hg38)
End
51550682/51323544 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC730100
Nearest miRNA
hsa-mir-1301/Upstream/627282; hsa-mir-10b/Downstream/1378978;
Nearest TSS
ENST00000437798/Upstream/97969; ENST00000435357/Downstream/1049574;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/295184, chr2-CpG: 118/Downstream/1247721
Nearby gene
NRXN1(-291008) ;
Upstream sequence
GACTTCCTAATCTTCACATTCATCCTTACCAGTTTAATTTTAAATGAAGATGTACTACAGAATAATTGAGTTGCTGCTTCTAGCTCTCTCGCTGATCTTT
Downstream sequence
TCTTTAAGTCACAGAAGTGTTTTAGGACCCATGGTGAACTCTACCAACAGTAAAAAAAAAAAATCCATTAACCACCTTCATAACAGTACAAATATTTCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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