Basic Information
VIS ID
TVIS44024852
Fusion event
HTLV-1-LOC100506274 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
7570869/7430738 (Hg38)
End
7570869/7430738 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100506274
Nearest miRNA
hsa-mir-7158/Upstream/780299; hsa-mir-10b/Downstream/2761876;
Nearest TSS
ENST00000437798/Upstream/169867; ENST00000417930/Downstream/241508;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/398357, chr2-CpG: 51/Downstream/202
Upstream sequence
GGACTCAGCAAGAGCGGCAGGAGGGGACTGAGCGTGCTTTTAAGGACTGTTCAGAGAGCAAGGGGACCCAAAGGGAGAAGGAAGTGCACACCCTGACACA
Downstream sequence
GAGAGTGAGGTGGAGACCCCAGCCGTGTCACAGAGCAGCGTGGGCTGGAGACTAAGCGCGGGGTGCAAGGGCTTCATGCGCCCTAGGGAGGAGGTCACTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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