Basic Information
VIS ID
TVIS44024863
Fusion event
HTLV-1-LOC105374820 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
78784587/78557461 (Hg38)
End
78784587/78557461 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105374820
Nearest miRNA
hsa-mir-1285-2/Upstream/3466547; hsa-mir-10b/Downstream/1091833;
Nearest TSS
ENST00000437798/Upstream/468731; ENST00000420648/Downstream/40450;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2846448, chr2-CpG: 32/Downstream/435605
Nearby gene
LOC101927967(No orient, 266730)
Upstream sequence
gtaagcaaaaccatgataattgaaagcttgcagagacattaaaaggaaaaaacaagtgcagacaatacctcttatcagcatagatgcaaaatataagtgc
Downstream sequence
aaaattggcaaataaaaaatataaatgacaaagcaatgtatccatcatgacaaaactgggtttaatcttggactacaaaggttatttaacatttaaaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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