VISDB Viral Integration Site DataBase

VIS ID

TVIS44024877

Fusion event

HTLV-1-RETSAT integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

p11.2

Reference genome

Start

End

85581218/85354095 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2L

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-6875-3p ; hsa-mir-6867-3p ; hsa-mir-103a-2-5p ; hsa-mir-4778-3p ; hsa-mir-1976 ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-660-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-665 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-4267 ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-1236-5p ; hsa-mir-1323 ; hsa-mir-142-5p ; hsa-mir-214-3p ; hsa-mir-224-5p ; hsa-mir-3174 ; hsa-mir-340-5p ; hsa-mir-3619-5p ; hsa-mir-3620-3p ; hsa-mir-4282 ; hsa-mir-4484 ; hsa-mir-4514 ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-4692 ; hsa-mir-4753-5p ; hsa-mir-4755-3p ; hsa-mir-4765 ; hsa-mir-4803 ; hsa-mir-548o-3p ; hsa-mir-551b-5p ; hsa-mir-5586-3p ; hsa-mir-5590-3p ; hsa-mir-6124 ; hsa-mir-6165 ; hsa-mir-6768-3p ; hsa-mir-6776-3p ; hsa-mir-6865-3p ; hsa-mir-6879-3p ; hsa-mir-759 ; hsa-mir-761 ; hsa-mir-873-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/5487512; hsa-mir-10b/Downstream/429505;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/25804, chr2-CpG: 25/Downstream/414

Upstream sequence

AGTTAAGGTCCTGGAACCAAGTGGAGGAATGAGTCACGGGGATTATCAGTTCCACGAGCCACGGGGATTACAAGTGGCAGGGCGGGTGCCAACACCTTGC

Downstream sequence

AAACCAAGGACAATGACCACACCCTTGGGACTACTATTCCCGGGGCCTACTAGGGCAAAGGCTATCGACAGTGTTGCACACTAAAGCGGGGCTCCTCCAC